Causes and consequences of large clonal assemblies in a poplar hybrid zone.
Identifieur interne : 001979 ( Main/Exploration ); précédent : 001978; suivant : 001980Causes and consequences of large clonal assemblies in a poplar hybrid zone.
Auteurs : David Macaya-Sanz [Espagne, États-Unis] ; Myriam Heuertz [France] ; Dorothea Lindtke [Suisse, Royaume-Uni] ; Giovanni G. Vendramin [Italie] ; Christian Lexer [Suisse, Autriche] ; Santiago C. González-Martínez [Espagne, France]Source :
- Molecular ecology [ 1365-294X ] ; 2016.
Descripteurs français
- KwdFr :
- MESH :
English descriptors
- KwdEn :
- MESH :
Abstract
Asexual reproduction is a common and fundamental mode of reproduction in plants. Although persistence in adverse conditions underlies most known cases of clonal dominance, proximal genetic drivers remain unclear, in particular for populations dominated by a few large clones. In this study, we studied a clonal population of the riparian tree Populus alba in the Douro river basin (northwestern Iberian Peninsula) where it hybridizes with Populus tremula, a species that grows in highly contrasted ecological conditions. We used 73 nuclear microsatellites to test whether genomic background (species ancestry) is a relevant cause of clonal success, and to assess the evolutionary consequences of clonal dominance by a few genets. Additional genotyping-by-sequencing data were produced to estimate the age of the largest clones. We found that a few ancient (over a few thousand years old) and widespread genets dominate the population, both in terms of clone size and number of sexual offspring produced. Interestingly, large clones possessed two genomic regions introgressed from P. tremula, which may have favoured their spread under stressful environmental conditions. At the population level, the spread of large genets was accompanied by an overall ancient (>0.1 Myr) but soft decline of effective population size. Despite this decrease, and the high clonality and dominance of sexual reproduction by large clones, the Douro hybrid zone still displays considerable genetic diversity and low inbreeding. This suggests that even in extreme cases as in the Douro, asexual and sexual dominance of a few large, geographically extended individuals does not threaten population survival.
DOI: 10.1111/mec.13850
PubMed: 27661461
Affiliations:
- Autriche, Espagne, France, Italie, Royaume-Uni, Suisse, États-Unis
- Aquitaine, Canton de Fribourg, Communauté de Madrid, Nouvelle-Aquitaine
- Fribourg
- Université de Fribourg
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González-Martínez</name><affiliation wicri:level="2"><nlm:affiliation>Department of Forest Ecology and Genetics, INIA-Forest Research Centre, Madrid, 28040, Spain. santiago.gonzalez-martinez@pierroton.inra.fr.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Department of Forest Ecology and Genetics, INIA-Forest Research Centre, Madrid, 28040</wicri:regionArea><placeName><region nuts="2" type="communauté">Communauté de Madrid</region></placeName></affiliation><affiliation wicri:level="3"><nlm:affiliation>BIOGECO, INRA, Univ. Bordeaux, Cestas, 33610, France. santiago.gonzalez-martinez@pierroton.inra.fr.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>BIOGECO, INRA, Univ. 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Although persistence in adverse conditions underlies most known cases of clonal dominance, proximal genetic drivers remain unclear, in particular for populations dominated by a few large clones. In this study, we studied a clonal population of the riparian tree Populus alba in the Douro river basin (northwestern Iberian Peninsula) where it hybridizes with Populus tremula, a species that grows in highly contrasted ecological conditions. We used 73 nuclear microsatellites to test whether genomic background (species ancestry) is a relevant cause of clonal success, and to assess the evolutionary consequences of clonal dominance by a few genets. Additional genotyping-by-sequencing data were produced to estimate the age of the largest clones. We found that a few ancient (over a few thousand years old) and widespread genets dominate the population, both in terms of clone size and number of sexual offspring produced. Interestingly, large clones possessed two genomic regions introgressed from P. tremula, which may have favoured their spread under stressful environmental conditions. At the population level, the spread of large genets was accompanied by an overall ancient (>0.1 Myr) but soft decline of effective population size. Despite this decrease, and the high clonality and dominance of sexual reproduction by large clones, the Douro hybrid zone still displays considerable genetic diversity and low inbreeding. This suggests that even in extreme cases as in the Douro, asexual and sexual dominance of a few large, geographically extended individuals does not threaten population survival.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">27661461</PMID><DateCompleted><Year>2017</Year><Month>11</Month><Day>29</Day></DateCompleted><DateRevised><Year>2018</Year><Month>12</Month><Day>02</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1365-294X</ISSN><JournalIssue CitedMedium="Internet"><Volume>25</Volume><Issue>21</Issue><PubDate><Year>2016</Year><Month>11</Month></PubDate></JournalIssue><Title>Molecular ecology</Title><ISOAbbreviation>Mol Ecol</ISOAbbreviation></Journal><ArticleTitle>Causes and consequences of large clonal assemblies in a poplar hybrid zone.</ArticleTitle><Pagination><MedlinePgn>5330-5344</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1111/mec.13850</ELocationID><Abstract><AbstractText>Asexual reproduction is a common and fundamental mode of reproduction in plants. Although persistence in adverse conditions underlies most known cases of clonal dominance, proximal genetic drivers remain unclear, in particular for populations dominated by a few large clones. In this study, we studied a clonal population of the riparian tree Populus alba in the Douro river basin (northwestern Iberian Peninsula) where it hybridizes with Populus tremula, a species that grows in highly contrasted ecological conditions. We used 73 nuclear microsatellites to test whether genomic background (species ancestry) is a relevant cause of clonal success, and to assess the evolutionary consequences of clonal dominance by a few genets. Additional genotyping-by-sequencing data were produced to estimate the age of the largest clones. We found that a few ancient (over a few thousand years old) and widespread genets dominate the population, both in terms of clone size and number of sexual offspring produced. Interestingly, large clones possessed two genomic regions introgressed from P. tremula, which may have favoured their spread under stressful environmental conditions. At the population level, the spread of large genets was accompanied by an overall ancient (>0.1 Myr) but soft decline of effective population size. Despite this decrease, and the high clonality and dominance of sexual reproduction by large clones, the Douro hybrid zone still displays considerable genetic diversity and low inbreeding. This suggests that even in extreme cases as in the Douro, asexual and sexual dominance of a few large, geographically extended individuals does not threaten population survival.</AbstractText><CopyrightInformation>© 2016 John Wiley & Sons Ltd.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Macaya-Sanz</LastName><ForeName>David</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Department of Forest Ecology and Genetics, INIA-Forest Research Centre, Madrid, 28040, Spain.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Biology, West Virginia University, Morgantown, WV, 26505, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Heuertz</LastName><ForeName>Myriam</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>BIOGECO, INRA, Univ. Bordeaux, Cestas, 33610, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lindtke</LastName><ForeName>Dorothea</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Unit of Ecology and Evolution, Department of Biology, University of Fribourg, Fribourg, 1700, Switzerland.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Animal and Plant Sciences, University of Sheffield, Sheffield, S10 2TN, UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Vendramin</LastName><ForeName>Giovanni G</ForeName><Initials>GG</Initials><AffiliationInfo><Affiliation>Institute of Biosciences and Bioresources, National Research Council, Sesto Fiorentino (Florence), 50019, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lexer</LastName><ForeName>Christian</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Unit of Ecology and Evolution, Department of Biology, University of Fribourg, Fribourg, 1700, Switzerland.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Botany and Biodiversity Research, Faculty of Life Sciences, University of Vienna, Vienna, A-1030, Austria.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>González-Martínez</LastName><ForeName>Santiago C</ForeName><Initials>SC</Initials><AffiliationInfo><Affiliation>Department of Forest Ecology and Genetics, INIA-Forest Research Centre, Madrid, 28040, Spain. santiago.gonzalez-martinez@pierroton.inra.fr.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>BIOGECO, INRA, Univ. Bordeaux, Cestas, 33610, France. santiago.gonzalez-martinez@pierroton.inra.fr.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><DataBankList CompleteYN="Y"><DataBank><DataBankName>Dryad</DataBankName><AccessionNumberList><AccessionNumber>10.5061/dryad.mp745</AccessionNumber></AccessionNumberList></DataBank></DataBankList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2016</Year><Month>10</Month><Day>14</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Mol Ecol</MedlineTA><NlmUniqueID>9214478</NlmUniqueID><ISSNLinking>0962-1083</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D014644" MajorTopicYN="N">Genetic Variation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005828" MajorTopicYN="Y">Genetics, Population</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005838" MajorTopicYN="N">Genotype</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D006824" MajorTopicYN="Y">Hybridization, Genetic</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018895" MajorTopicYN="N">Microsatellite Repeats</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012100" MajorTopicYN="N">Reproduction, Asexual</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D013030" MajorTopicYN="N">Spain</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">Iberian Peninsula</Keyword><Keyword MajorTopicYN="Y">Populus spp.</Keyword><Keyword MajorTopicYN="Y">clonality</Keyword><Keyword MajorTopicYN="Y">hybrid zone</Keyword><Keyword MajorTopicYN="Y">specific ancestry</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2015</Year><Month>03</Month><Day>13</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2016</Year><Month>09</Month><Day>02</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2016</Year><Month>09</Month><Day>06</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2016</Year><Month>10</Month><Day>28</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2017</Year><Month>12</Month><Day>1</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2016</Year><Month>9</Month><Day>24</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">27661461</ArticleId><ArticleId IdType="doi">10.1111/mec.13850</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Autriche</li><li>Espagne</li><li>France</li><li>Italie</li><li>Royaume-Uni</li><li>Suisse</li><li>États-Unis</li></country><region><li>Aquitaine</li><li>Canton de Fribourg</li><li>Communauté de Madrid</li><li>Nouvelle-Aquitaine</li></region><settlement><li>Fribourg</li></settlement><orgName><li>Université de Fribourg</li></orgName></list><tree><country name="Espagne"><region name="Communauté de Madrid"><name sortKey="Macaya Sanz, David" sort="Macaya Sanz, David" uniqKey="Macaya Sanz D" first="David" last="Macaya-Sanz">David Macaya-Sanz</name></region><name sortKey="Gonzalez Martinez, Santiago C" sort="Gonzalez Martinez, Santiago C" uniqKey="Gonzalez Martinez S" first="Santiago C" last="González-Martínez">Santiago C. 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{{Explor lien
|wiki= Bois
|area= PoplarV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:27661461
|texte= Causes and consequences of large clonal assemblies in a poplar hybrid zone.
}}
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